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E-mail:
tatiana.marquezlago (at) gmail.com
 
List of Publications
Journal Publications

    NOTE: Articles submitted for peer-review publications and pre-prints (arXiv) are not included in this list.


  • Ghosh, A. and Marquez-Lago, T. (2015)
    Simulating Stochastic Reaction-Diffusion Systems on and within Moving Boundaries.
    PLoS ONE. 10(7):e0133401
    PDF link
  • Leier, A. and Marquez-Lago, T. (2015)
    Delay chemical master equation: direct and closed-form solutions.
    Proc. Royal Society A 471:20150049
    PDF link
  • Ghosh, A., Leier, A. and Marquez-Lago, T. (2015)
    The Spatial Chemical Langevin Equation and Reaction Diffusion Master Equations: moments and qualitative solutions.
    Theoretical Biology and Medical Modelling 12:5
    PDF link
  • Sanchez-Garduno, F., Miramontes, P. and Marquez-Lago, T. (2014)
    Role reversal in a predator-prey interaction.
    Royal Society Open Science. 1: 140186
    PDF link
  • Lopez-Caamal, F. and Marquez-Lago, T. (2014)
    Order Reduction of the Chemical Master Equation via Balanced Realisation.
    PLoS ONE. 9(8): e103521
    PDF link
  • Zavala, E. and Marquez-Lago, T. (2014)
    The Long and Viscous Road: Uncovering Nuclear Diffusion Barriers in Closed Mitosis.
    PLoS Computational Biology. 10(7): e1003725
    PDF link
  • Lopez-Caamal, F. and Marquez-Lago, T. (2014)
    Exact Probability Distributions of Selected Species in Stochastic Chemical Reaction Networks.
    Bull. Math. Biol. - Accepted for publication (DOI soon to follow)
  • Leier, A., Barrio, M. and Marquez-Lago, T. (2014)
    Exact model reduction with delays: closed-form distributions and extensions to fully bi-directional monomolecular reactions.
    J. Royal Society Interface 11: 20140108
    PDF link
  • Marquez-Lago, T. and Padilla, P. (2014)
    A selection criterion for patterns in reaction-diffusion systems.
    Theoretical Biology and Medical Modelling 11:7
    PDF link
  • Zavala, E. and Marquez-Lago, T. (2014)
    Delays Induce Novel Stochastic Effects in Negative Feedback Gene Circuits.
    Biophysical J. Vol. 106, Issue 2: 467-478
    PDF link
  • Barrio, M.*, Leier, A.*, and Marquez-Lago, T. (2013)
    Reduction of chemical reaction networks through delay distributions.
    J. Chem. Phys. 138, 104114
    PDF link
  •    * All authors contributed equally

  • Boettcher, B. *, Marquez-Lago, T. *, Bayer, M., Weiss, E., Barral, Y. (2012)
    Nuclear envelope morphology constrains diffusion and promotes asymmetric protein segregation in closed mitosis.
    J. Cell Biol. Vol. 197, Number 7: 921-937.
    PDF link
  •    ** Article featured in JCB Research Highlights: PDF link
           Article included in JCB's most-read list
           Faculty of 1000 rated: Link
       * Co-first authors

  • Marquez-Lago, T., Leier, A., and Burrage, K. (2012)
    Anomalous diffusion and multifractional Brownian motion: simulating molecular crowding and physical obstacles in Systems Biology.
    IET Systems Biology 6(4):134-142
    PDF link
  •    ** Article appearing in special issue (Modelling Noise in Biochemical Reaction Networks)

  • Leier, A., and Marquez-Lago, T. (2011)
    Correction factors for boundary diffusion and bimolecular reactions in reaction-diffusion master equations.
    J. Chem. Phys. 135, 134109
    PDF link
  •    ** Article selected for JCP focus in Biochemical Physics, Volume 5, Issue 10: Link

  • Hatzikirou, H., Chauviere, A., Bauer, A., Leier, A., Lewis, M., Macklin, P., Marquez-Lago, T., Bearer, E., Cristini, V. (2011)
    Integrative Physical Oncology.
    WIREs Systems Biology and Medicine
    PDF link
  • Marquez-Lago, T. and Leier, A. (2011)
    Stochastic adaptation and fold-change detection: from single-cell to population behavior.
    BMC Systems Biology 5:22.
    PDF link
  • Lang, M., Marquez-Lago, T., Stelling, J., and Waldherr, S. (2011)
    Autonomous synchronization of chemically coupled synthetic oscillators.
    Bull. Math. Biol. Vol. 73, Number 11: 2678-2706.
    PDF link
  • Marquez-Lago, T., Allen, D.M. and Thewalt, J. (2010)
    A novel approach to modelling water transport and drug diffusion through the stratum corneum.
    Theoretical Biology and Medical Modelling 7:33.
    PDF link
  • Marquez-Lago, T., and Stelling, J. (2010)
    Counter-intuitive stochastic behavior of simple gene circuits with negative feedbacks.
    Biophysical J. 98(9):1742-1750.
    PDF link
  •    ** Article commented in Nature (News and Views): PDF link

  • Marquez-Lago, T., Leier, A., and Burrage, K. (2010)
    Probability distributed time delays: integrating spatial effects into temporal models.
    BMC Systems Biology 4:19.
    PDF link
  • Tigges, M., Marquez-Lago, T., Stelling, J. and Fussenegger, M. (2009)
    A tunable synthetic mammalian oscillator.
    Nature, 457: 309-312.
    PDF link
  •    ** Article featured in Nature (News and Views): PDF link
           Nature podcast: 15 January 2009. Link
           Nature webfocus (Synthetic systems biology). Link
           Faculty of 1000 rated: Link

  • Leier, A., Marquez-Lago, T., Burrage, K. (2008)
    Generalized binomial tau-leap method for biochemical processes incorporating both delay and intrinsic noise.
    J. Chem. Phys. 128, 205107 (2008).
    PDF link
  •    ** Article selected for JCP focus in Biochemical Physics, Volume 2, Issue 5: Link

  • Leier, A., Marquez-Lago, T., Burrage, K., Burrage, P. (2008)
    Modelling intrinsic noise and delays in chemical kinetics of coupled autoregulated oscillating cells.
    In.t J. Mult. Comp. Eng., Vol. 6, Issue 1: 77-86.
    PDF link
  • Marquez-Lago, T., Burrage, K. (2007)
    Binomial tau-leap spatial stochastic simulation algorithm for applications in chemical kinetics.
    J. Chem. Phys. 127, 104101.
    PDF link
  •    ** Article selected for JCP focus in Biochemical Physics, Volume 1, Issue 9: Link

Book Chapters (including original research)

  • Burrage, K., Burrage, P., Leier, A., Marquez-Lago, T.T. and Nicolau, D.V. (2011)
    Stochastic simulation for spatial modelling of dynamic processes in a living cell. In Design and Analysis of Bio-molecular Circuits (Springer Verlag). Koeppl, H., Setti, G. di Bernardo, M. and Densmore, D. (Eds.)
    PDF link

  • Marquez-Lago, T.T. and Marchisio M.A. (2010)
    Synthetic Biology: dynamic modeling and construction of cell systems. In Dynamic Process Modelling (Wiley-VCH). Banga, J., Georgiadis, M. and Pistikopoulos, S. (Eds.)
    PDF link
  • Barrio, M., Burrage, K., Burrage, P., Leier, A. and Marquez-Lago, T. (2009)
    Computational Approaches for Modeling Intrinsic Noise and Delays in Genetic Regulatory Networks. In Computational Methodologies in Gene Regulatory Networks. Das, S., Caragea, D., Hsu, W. H. and Welch, S. M. (Eds.).
    PDF link
  • Lopez-Aguilar, F., Marquez-Lago, T. (2007)
    El colapso de un altepetl. Trayectoria de Itzmiquilpan despues de la conquista. In Antropologia Fractal. Lopez Aguilar, F., Brambila Paz, F. (Eds.), pp. 141 -- 164.CIMAT and Sociedad Matematica Mexicana (first edition), Insituto Nacional de Antropologia e Historia (second edition).
Conference Proceedings

  • Burrage, K., Burrage, P., Leier, A., Marquez-Lago, T. (2008)
    Stochastic delay models for molecular clocks and somite formation. Proc. SPIE. Complex Systems II, 68020Z, Vol. 6802.
    PDF link

  • Leslie, K.K., Marquez-Lago, T., Slepoy, A., Plimpton, S., Oliver, J., and Steinberg, S. (2005)
    ChemCell mathematical modeling defines a biologically relevant lower limit of progesterone receptors in endometrial cancer. Reproductive Sciences, Vol. 12: pp. 22A - 82A.
  • Bohun, S. et al. (2001)
    Modelling InSb Czochralski Growth, Proc. 5th PIMS-IPSW.
    PDF link
  • Anderson, P. et al. (2001)
    Locating watchtowers in terrains. Proc. 4th PIMS-GIMMC.
    PDF link
Dissertation and Theses

  • Marquez-Lago, T. Numerical estimation of Progesterone Transcription in the EGFR pathway. University of New Mexico, U.S.A.

  • Marquez-Lago, T. A porous media model for transport and diffusion through the Stratum Corneum. Simon Fraser University, Canada.
  • Marquez-Lago, T. Neural Networks for signal recognition in DNA sequences. Universidad Nacional Autonoma de Mexico, Mexico.
  • Marquez-Lago, T. Cultural Complexity - culture as a complex adaptive system. Universidad Panamericana, Mexico.


Last updated: July, 2015